Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
INTS10

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neuron
cell line
Neuron
cell type
cortical neurons differentated from pluripotent stem cells
genotype
wt
treatment
No treatment
chip antibody
INTS10 (proteintech 15271-1-AP)
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM7246589
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei (Covaris S220), and protein-DNA complexes were isolated with antibody-conjugated Dynabeads NEBNext Ultra II DNA Library Prep Kit for Illumina (New England Biolabs Inc.)

Sequencing Platform

instrument_model
NextSeq 2000

hg38

Number of total reads
38230241
Reads aligned (%)
97.1
Duplicates removed (%)
20.8
Number of peaks
2591 (qval < 1E-05)

hg19

Number of total reads
38230241
Reads aligned (%)
96.4
Duplicates removed (%)
20.9
Number of peaks
2498 (qval < 1E-05)

Base call quality data from DBCLS SRA